Protein Alignment SC35 and AtRZ-1c

DIOPT Version :10

• Sequence 1: NP_652612.1
• Gene: SC35 / 53444
• FlyBaseID: FBgn0265298
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_196048.1
• Gene: AtRZ-1c / 830307
• AraportID: AT5G04280
• Length: 310
• Species: Arabidopsis thaliana
• Alignment Length: 297
• Identity: 73/297 - (24%)
• Similarity: 90/297 - (30%)
• Gaps: 136/297 - (45%)

  Fly    27 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDG 91
            |..|:...|..||.|.|.|.|::.|..|..:|.|..||||.|:.|.|:|..::::..|.||....
plant    11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGD 75

  Fly    92 RELRVQMA--------------RYGRPSSPTRSSSGRRGGGGGGG-------------------- 122
            |.:.|..|              |.||.|..:.:..|..|||||||
plant    76 RVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARD 140

  Fly   123 ----SGGR---------RRS--------------RSRSPMRRR-------------------SRS 141
                .|||         |.|              |.|...|.|                   ||.
plant   141 CPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFDSRE 205

  Fly   142 ---PRRR-----------------SYSRSRS---PGSHSPERRSKFSR----------------- 166
               ||.|                 .|||...   |||:...|  .|.|
plant   206 AYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYPPGSYDKAR--SFERDIAPSAGSDRYGGGRAG 268

  Fly   167 SPVRGDSRNGIG--------------SGSGGLAPAAS 189
            .|:||....|.|              ||.||..|::|
plant   269 GPIRGGGEEGRGFRSRAGAPYERPSRSGGGGAYPSSS 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SC35	NP_652612.1	RRM_SRSF2_SRSF8	25..97	CDD:409751	25/69 (36%)
AtRZ-1c	NP_196048.1	RRM	8..89	CDD:440488	27/77 (35%)
		zf-CCHC	128..143	CDD:395050	0/14 (0%)
		U2AF_lg	170..>256	CDD:273727	18/87 (21%)