DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and PHIP1

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_191094.1 Gene:PHIP1 / 824700 AraportID:AT3G55340 Length:597 Species:Arabidopsis thaliana


Alignment Length:104 Identity:29/104 - (27%)
Similarity:54/104 - (51%) Gaps:4/104 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDA 80
            |..:||...:.:.||.:.||..|:|::|..| .:..:.:.:::.|.|.:|:|.|.|.|......|
plant   255 PEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIA 318

  Fly    81 LEAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGG 119
            |: :|.:::.||.:::..|...||:  |..:.|.....|
plant   319 LK-LDQQVICGRPVKICCALKDRPA--TDHTPGETNNAG 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 20/71 (28%)
PHIP1NP_191094.1 RRM1_PHIP1 163..234 CDD:409714
RRM2_PHIP1 263..334 CDD:409715 20/72 (28%)
PTZ00368 393..592 CDD:173561
Blue background indicates that the domain is not in the aligned region.

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