DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SC35 and ATRZ-1A

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_189273.1 Gene:ATRZ-1A / 822246 AraportID:AT3G26420 Length:245 Species:Arabidopsis thaliana


Alignment Length:154 Identity:44/154 - (28%)
Similarity:73/154 - (47%) Gaps:13/154 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDG 91
            :..|.:.|:...||..||:.|.:.:..:..|:::..||||.|:.|.:|:..::|:.||:|..|||
plant    11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDG 75

  Fly    92 RELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRS-----RSPRRRSYSRSR 151
            |.:.|..|:      |.:..:||...|..|...|..|.||| |...|.     :..:...::| .
plant    76 RTITVDKAQ------PHQGGAGRDNDGDRGRDRGYDRDRSR-PSGGRGGGDCFKCGKPGHFAR-E 132

  Fly   152 SPGSHSPERRSKFSRSPVRGDSRN 175
            .|...|.:...:||....|..|::
plant   133 CPSESSRDGGGRFSSKDDRYSSKD 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 23/69 (33%)
ATRZ-1ANP_189273.1 RRM2_NsCP33_like 8..83 CDD:410187 24/71 (34%)
ZnF_C2HC 120..135 CDD:197667 1/15 (7%)
U2AF_lg 136..>242 CDD:273727 5/21 (24%)
PRK04537 <208..240 CDD:235307
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.