DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and tia1

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:81 Identity:29/81 - (35%)
Similarity:49/81 - (60%) Gaps:1/81 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDG 91
            |.:|:...|.:|:|..|...|.:.|..:.:|..|.:|:|:.||.|::|.|||:|::.|.|:.|.|
Zfish   100 VGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 164

  Fly    92 RELRVQMARYGRPSSP 107
            |::|...|. .:|.:|
Zfish   165 RQIRTNWAT-RKPPAP 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 26/69 (38%)
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027
RRM2_TIA1 94..171 CDD:410030 26/70 (37%)
RRM3_TIA1 204..275 CDD:410032
Blue background indicates that the domain is not in the aligned region.

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