DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and Cstf2

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001421314.1 Gene:Cstf2 / 683927 RGDID:1596566 Length:624 Species:Rattus norvegicus


Alignment Length:148 Identity:42/148 - (28%)
Similarity:63/148 - (42%) Gaps:27/148 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PRID-GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDA 80
            |.:| .:.|:.|.|:.|..|.|.|:.:|...|.|....:..||.|.:.:|:.|..:.|:..|..|
  Rat     9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73

  Fly    81 LEAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPRRR 145
            :..::||...||.|||..|...:.....:|.          |:|        :|:   ..||   
  Rat    74 MRNLNGREFSGRALRVDNAASEKNKEELKSL----------GTG--------APV---IESP--- 114

  Fly   146 SYSRSRSPGSHSPERRSK 163
             |..|.|| ..:||..||
  Rat   115 -YGESISP-EDAPESISK 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 23/71 (32%)
Cstf2NP_001421314.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/83 (33%)
CSTF2_hinge 112..191 CDD:433869 10/24 (42%)
CSTF_C 580..620 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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