DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and cirbpb

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001035411.2 Gene:cirbpb / 678563 ZFINID:ZDB-GENE-030131-5841 Length:206 Species:Danio rerio


Alignment Length:171 Identity:62/171 - (36%)
Similarity:78/171 - (45%) Gaps:24/171 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRML 89
            |.:..|:|.||.:.|...|.:.|.:..:.:.|||.|..||||.||.|.:..||:||:.||:|:.:
Zfish     7 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 71

  Fly    90 DGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRSPG 154
            |||.:||..|  |:...   .|.|.|||..|||.|..|.||.|.    .......|||...||.|
Zfish    72 DGRMIRVDEA--GKSGG---RSGGFRGGSRGGGRGFFRGSRGRG----GGGYGGDRSYGSDRSFG 127

  Fly   155 SHSPERRSKFSRSPVRGDSRNG------------IGSGSGG 183
            .   :|.....||...||...|            .|.|.||
Zfish   128 G---DRSYGGDRSYGGGDRGYGGGERSYGGGDRSYGGGGGG 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 30/71 (42%)
cirbpbNP_001035411.2 RRM_CIRBP_RBM3 5..83 CDD:409883 32/77 (42%)

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