| Sequence 1: | NP_652612.1 | Gene: | SC35 / 53444 | FlyBaseID: | FBgn0265298 | Length: | 195 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_062275.1 | Gene: | Pabpn1 / 54196 | MGIID: | 1859158 | Length: | 302 | Species: | Mus musculus |
| Alignment Length: | 167 | Identity: | 51/167 - (30%) |
|---|---|---|---|
| Similarity: | 72/167 - (43%) | Gaps: | 35/167 - (20%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 15 PPPRIDGMV-------------SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 66
Fly 67 AFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRS 131
Fly 132 RSPMRRRSRS---------PRRRSY-SRSRSPGSHSP 158 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| SC35 | NP_652612.1 | RRM_SRSF2_SRSF8 | 25..97 | CDD:409751 | 23/71 (32%) |
| Pabpn1 | NP_062275.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..111 | ||
| Interaction with SKIP. /evidence=ECO:0000250 | 2..141 | ||||
| Stimulates PAPOLA. /evidence=ECO:0000250 | 115..143 | ||||
| RRM_II_PABPN1 | 169..244 | CDD:409966 | 25/75 (33%) | ||
| Strong poly(A) affinity and self-association. /evidence=ECO:0000250 | 255..302 | 17/54 (31%) | |||
| Interaction with PAPOLA. /evidence=ECO:0000250 | 282..302 | 8/20 (40%) | |||
| Blue background indicates that the domain is not in the aligned region. | |||||