DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and snrnp70

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001003875.1 Gene:snrnp70 / 445398 ZFINID:ZDB-GENE-040825-2 Length:495 Species:Danio rerio


Alignment Length:215 Identity:71/215 - (33%)
Similarity:90/215 - (41%) Gaps:51/215 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAM 84
            |...:|.|..:.|.||...|||.||..|.:..|||..::.|.:.||:||:.:..:||...|.:..
Zfish   100 DAFKTLFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHA 164

  Fly    85 DGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGG------------SG------------- 124
            ||:.:|||.:.|.:.| ||.....|.   ||.|||.||            ||             
Zfish   165 DGKKIDGRRVLVDVER-GRTVKGWRP---RRLGGGLGGTRRGGADVNIKHSGRDDTSRYDDRPIG 225

  Fly   125 -------GRRRSRSRSPMRRRSRSPRRRSYSRSRSPGSHSPERRSKFSRSPVRGDS--------R 174
                   |.||.|||...|.:.|..||||.||.|...:.|.||....:.....|.|        |
Zfish   226 SDRDRDRGERRERSRERDRDKERGERRRSRSRERRRHTRSHERERAAAGDEAGGSSRRRERERER 290

  Fly   175 NGIGSGSGGLAPAASRSRSR 194
            .|.|:|.       ||.|||
Zfish   291 GGAGAGE-------SRERSR 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 27/71 (38%)
snrnp70NP_001003875.1 U1snRNP70_N 3..94 CDD:432406
RRM_snRNP70 102..187 CDD:409682 31/85 (36%)
Blue background indicates that the domain is not in the aligned region.

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