DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SC35 and RnpS1

DIOPT Version :9

Sequence 1:NP_001188794.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_649903.1 Gene:RnpS1 / 41147 FlyBaseID:FBgn0037707 Length:374 Species:Drosophila melanogaster


Alignment Length:185 Identity:65/185 - (35%)
Similarity:83/185 - (44%) Gaps:36/185 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GAGGLGAARPPPRID-----------GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 59
            |.|.:....||.|.:           ..|.:.|..||...|.:.:..:|...|:|.::..|.||:
  Fly   191 GRGSVERTPPPKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRF 255

  Fly    60 -TRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRV-------QMARYGRPSSPTRSSSGRR- 115
             ....||.|||.:....|.|.|::.|||..:||:|:.|       |.....|||.|.|.....| 
  Fly   256 HPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVKQRPPMRRPSPPMRRPQNNRW 320

  Fly   116 -----------GGGGGGGSGGRRRS--RSRSPMRRRSRSPRRRSYSRSRSPGSHS 157
                       .||||||.||||:|  |:|...|||||||.||   |.||..|.|
  Fly   321 RSPPQFNRFNNRGGGGGGGGGRRQSPMRNRRSPRRRSRSPIRR---RRRSNSSDS 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_001188794.1 RRM <24..>100 CDD:223796 26/83 (31%)
RRM_SRSF2_SRSF8 25..97 CDD:240757 25/79 (32%)
RnpS1NP_649903.1 RRM <196..>301 CDD:223796 29/104 (28%)
RRM_RNPS1 221..294 CDD:240811 24/72 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1169
SonicParanoid 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.