DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and Rbmx2

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001107258.2 Gene:Rbmx2 / 367930 RGDID:1562693 Length:328 Species:Rattus norvegicus


Alignment Length:275 Identity:56/275 - (20%)
Similarity:78/275 - (28%) Gaps:125/275 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGREL 94
            |.|..|..|:..||.:.||:.:|.:.||:.|.:|:||.|:.:.|:|....|::..:|..:.||.:
  Rat    43 LPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTI 107

  Fly    95 RV-QMARYGR------------------------PSSP--------------------------- 107
            || .:|.|..                        ||||                           
  Rat   108 RVDHVANYRAPQESEDVDDVTRELQEKGCGAKTPPSSPPEVSEDEDAKVTKKPKKDKKEKKKKKE 172

  Fly   108 ----------------------------------------TRSSSGRRGGGGGGGSGGRRRSRSR 132
                                                    .:|....|.....|...||...|.|
  Rat   173 KEKTERPVQAELPSCSRSKTVKETDEQSAKKHSSKPSERAQKSECRERKKSHSGSPDGRTSCRGR 237

  Fly   133 S-----------------PMRRRSRSPRRRSYSRSRSPGSHSPERRSKFSRSPVRGDSRNGIGSG 180
            :                 |..||....:.|...|.||.|:||....                |..
  Rat   238 AEEPEWEAKKEKHKHEHKPSSRREGEEKSRDKDRGRSSGTHSSRHH----------------GHS 286

  Fly   181 SGGLAPAASRSRSRS 195
            .|....:.|||||||
  Rat   287 EGRSHRSRSRSRSRS 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 24/67 (36%)
Rbmx2NP_001107258.2 RRM_ist3_like 27..115 CDD:409845 25/71 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 118..328 30/200 (15%)

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