DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and Pabp2

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_476902.1 Gene:Pabp2 / 35788 FlyBaseID:FBgn0005648 Length:224 Species:Drosophila melanogaster


Alignment Length:153 Identity:44/153 - (28%)
Similarity:64/153 - (41%) Gaps:12/153 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GGGAGGLG----AARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR 64
            ||...||.    :......||.. |:.|.|:.|..:.|:|...|..||.:..:.|..::.....:
  Fly    74 GGSTTGLATVPLSLEEKQEIDTR-SVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPK 137

  Fly    65 GFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRS 129
            |||::.|..|...|.|| ||:..:..||:::|...|..||...|.:...|      |...||...
  Fly   138 GFAYIEFGSKEFVETAL-AMNETLFRGRQIKVMSKRTNRPGLSTTNRFAR------GSFRGRGAR 195

  Fly   130 RSRSPMRRRSRSPRRRSYSRSRS 152
            .||:......|..||....|.|:
  Fly   196 VSRACCHSTFRGARRAMGYRGRA 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 21/71 (30%)
Pabp2NP_476902.1 DNA_pol_phi <3..68 CDD:461488
RRM_II_PABPN1 97..172 CDD:409966 23/75 (31%)
Blue background indicates that the domain is not in the aligned region.

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