DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and srsf4

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:237 Identity:74/237 - (31%)
Similarity:105/237 - (44%) Gaps:53/237 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 68
            |||.||.....||.|.|  ..|.|:||:.|.:.:||:....:.|||  .|...:: .|::.|  .
Zfish    90 GGGGGGGDRYGPPTRTD--YRLIVENLSSRCSWQDLKDYMRQAGEV--TYADTNK-GRKNEG--V 147

  Fly    69 VRFYDKRDAEDALEAMDGRMLDGRELRV--------QMARYGRPSSPTRSSSGR--------RGG 117
            :.|....|.:.|||.:||..::||::|:        :...|.|.:|.:||.|.|        |..
Zfish   148 IEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGARRRRSYSRSASRSRSRSRRSRRSRSHSRTS 212

  Fly   118 GGGGGSGGRRRSRSRSPMRRRSRSPRR--------------RSYSRSRSPGSHSPERRSKFSRSP 168
            ...|.||.|.||||.| .:.:|||.|.              |..|.||||.:...:|.:|..||.
Zfish   213 SRSGASGSRSRSRSTS-KKAKSRSSRMEESSNGARKGGDSGRDNSLSRSPQNKKSKRENKRGRSD 276

  Fly   169 VRGDSRN------GIGSGSGGLAPAASRS---------RSRS 195
            .|..||:      .:...||..:..||:|         |||:
Zfish   277 SRSRSRSKSRNDRDLSRESGSKSQEASKSGDEGRAGTHRSRA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 23/79 (29%)
srsf4NP_955868.1 RRM_SF 1..81 CDD:473069
RRM2_SRSF4 101..182 CDD:410157 27/87 (31%)
Blue background indicates that the domain is not in the aligned region.

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