DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and Cstf2t

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:117 Identity:33/117 - (28%)
Similarity:47/117 - (40%) Gaps:21/117 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRD 76
            |.|.|.....:.|:.|.|:.|..|.|.|:.:|...|.|....:..||.|.:.:|:.|..:.|:..
  Rat     5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQET 69

  Fly    77 AEDALEAMDGRMLDGRELRVQMAR---------------------YGRPSSP 107
            |..|:..::||...||.|||..|.                     ||.|..|
  Rat    70 ALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDP 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 23/71 (32%)
Cstf2tNP_001101056.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 26/83 (31%)
CSTF2_hinge 112..191 CDD:433869 4/10 (40%)
CSTF_C 585..625 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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