DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and gar2

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_593531.1 Gene:gar2 / 2542869 PomBaseID:SPAC140.02 Length:500 Species:Schizosaccharomyces pombe


Alignment Length:150 Identity:51/150 - (34%)
Similarity:70/150 - (46%) Gaps:23/150 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDG 91
            |.||::..|.:||...|..||::..|.:|.|..:...:||.:|.|.|...|:..:| |:|..:.|
pombe   370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAG 433

  Fly    92 RELRVQMA--RYGRPSSPTRSSSGRRG--GGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRS 152
            |..|:..:  |.|..|...|...|.||  ||.||..|||.|.|..:    ||.:|.|        
pombe   434 RPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGA----RSGNPNR-------- 486

  Fly   153 PGSHSPERRSKFSRSPVRGD 172
             ||.:|     ||.:.|..|
pombe   487 -GSVAP-----FSGNKVTFD 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 24/69 (35%)
gar2NP_593531.1 PRK13808 <2..64 CDD:172341
RRM_SF 264..339 CDD:473069
RRM2_gar2 368..439 CDD:409882 24/69 (35%)
Blue background indicates that the domain is not in the aligned region.

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