DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and rsp-6

DIOPT Version :9

Sequence 1:NP_001188794.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_741446.1 Gene:rsp-6 / 177566 WormBaseID:WBGene00004703 Length:179 Species:Caenorhabditis elegans


Alignment Length:184 Identity:70/184 - (38%)
Similarity:88/184 - (47%) Gaps:30/184 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDG 91
            |..|....|.::|..:|:|.|.:..:::     .|...|||||.:.|.||||||:.|:||..:.|
 Worm     7 VGGLPSDATSQELEEIFDRFGRIRKVWV-----ARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66

  Fly    92 RELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGG---------RRRSRSRSPMRRRSRS-----P 142
            ...||:::     :...|...||.||.||.|.||         |.||||||..|.|.||     .
 Worm    67 VRARVELS-----TGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDRSRDRSRD 126

  Fly   143 RRRSYSRSRS-PGSHSPERRSKFSRSPVRGDSRNGIGSGSGGLAPAASRSRSRS 195
            |.|..||.|| ..|...||....||||...|.     |.|...:.:.|||||||
 Worm   127 RSRDRSRDRSRERSRERERTRSRSRSPQERDR-----SHSKSRSRSRSRSRSRS 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_001188794.1 RRM <24..>100 CDD:223796 26/72 (36%)
RRM_SRSF2_SRSF8 25..97 CDD:240757 25/69 (36%)
rsp-6NP_741446.1 RRM <2..>75 CDD:223796 26/77 (34%)
RRM_SRSF3_like 4..75 CDD:240819 26/77 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.928771 Normalized mean entropy S1239
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1533297at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.960

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