DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and sup-46

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_492677.1 Gene:sup-46 / 172881 WormBaseID:WBGene00045383 Length:454 Species:Caenorhabditis elegans


Alignment Length:261 Identity:57/261 - (21%)
Similarity:98/261 - (37%) Gaps:86/261 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SNGGGAGGLGAARPPPR-ID-------------GMVSLK-------------VDNLTYRTTPEDL 39
            :.||||||.|   |||: :|             .|..|:             :.||.:....:.|
 Worm   143 TGGGGAGGRG---PPPKDLDRPTRTGTYDLFGLNMEFLRQHNIEPPLCERIFIANLAFNVGTDKL 204

  Fly    40 RRVFERCGEVG--DIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRMLDGRELRVQMARYG 102
            ..||...|::.  |..|.::   .:|:|...:::....:|..|:..::|:.|..|.|.|:|.|: 
 Worm   205 YEVFGMAGKITWMDFRIDKE---GKSKGVCVIQYTHPIEAVQAVSMLNGQRLFDRNLVVKMDRF- 265

  Fly   103 RPSSPTRSSSGRRGG--------GGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRSPGSHSPE 159
                 .:....:.||        |.|.|:.|...|.........:..|    ::...:|....|:
 Worm   266 -----DKELEHKEGGLPRGLESIGMGLGAEGAPLSNVHGMFPGDASVP----FTAPAAPFVGGPQ 321

  Fly   160 -----------RRSKFSRS-----PVRGDSRNGIG---------------SGSGGLAPAASRSRS 193
                       .::.|:||     |..|::  |:|               :|:||||.||:...:
 Worm   322 VVSAGGFGGVVEQANFARSVMNNGPFGGNA--GVGGAGGATFAQPDVFGVNGAGGLAGAATPQAT 384

  Fly   194 R 194
            |
 Worm   385 R 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 17/86 (20%)
sup-46NP_492677.1 RRM_SF 47..120 CDD:473069
PABP-1234 <70..>321 CDD:130689 41/193 (21%)
RRM2_hnRNPM_like 190..263 CDD:409820 17/75 (23%)
RRM_SF 387..452 CDD:409669
Blue background indicates that the domain is not in the aligned region.

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