Protein Alignment SC35 and Pabpn1

DIOPT Version :10

• Sequence 1: NP_652612.1
• Gene: SC35 / 53444
• FlyBaseID: FBgn0265298
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: XP_063129984.1
• Gene: Pabpn1 / 116697
• RGDID: 619928
• Length: 320
• Species: Rattus norvegicus
• Alignment Length: 178
• Identity: 46/178 - (25%)
• Similarity: 70/178 - (39%)
• Gaps: 52/178 - (29%)

  Fly    15 PPPRIDGMV-------------SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 66
            |||...|.|             |:.|.|:.|..|.|:|...|..||.|..:.|..|:::...:||
  Rat   147 PPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF 211

  Fly    67 AFVRFYDKRDAEDALEAMDGRMLDGRELRVQMA--------RYG-----------------RPSS 106
            |::.|.||.....:| |:|..:..||:::|.:.        |:.                 |.:.
  Rat   212 AYIEFSDKESVRTSL-ALDESLFRGRQIKVSLGPWLLSILYRFSSLTPRLSVLCPFQVIPKRTNR 275

  Fly   107 PTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSR-------SPRRRSY 147
            |..|::.|      |....|.|:|:.:....|||       .||.|.|
  Rat   276 PGISTTDR------GFPRARYRARTTNYNSSRSRFYSGFNSRPRGRIY 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SC35	NP_652612.1	RRM_SRSF2_SRSF8	25..97	CDD:409751	23/71 (32%)
Pabpn1	XP_063129984.1	None