DRSC/TRiP Functional Genomics Resources

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Protein Alignment SC35 and taf6l

DIOPT Version :10

Sequence 1:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster
Sequence 2:XP_002933255.1 Gene:taf6l / 100486266 XenbaseID:XB-GENE-1000128 Length:574 Species:Xenopus tropicalis


Alignment Length:120 Identity:27/120 - (22%)
Similarity:40/120 - (33%) Gaps:35/120 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 DGRELRVQMARYGRPSSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRSPG 154
            ||.....|:..:|...:.|              .|.:.:..:::.|...|| ||..|....|:.|
 Frog   444 DGTRKMPQLTAHGEEEAVT--------------VGKQCQRPTQTQMSAASR-PRGTSRQGQRTQG 493

  Fly   155 SHSPERRSKFSRSPVRGDSR-------NGIGSGSGG----------LAPAASRSR 192
            .....:||:.:   .||..|       ...|.|.||          ..|.|:.||
 Frog   494 VREAFQRSRLT---PRGTPRFTFLIGGRQAGRGGGGRRFQSVFQLHTGPGATASR 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 2/6 (33%)
taf6lXP_002933255.1 HFD_TAF6L 12..82 CDD:467056
TAF6C 151..364 CDD:381749
HEAT repeat 155..186 CDD:381749
HEAT repeat 193..225 CDD:381749
HEAT repeat 235..277 CDD:381749
HEAT repeat 284..316 CDD:381749
HEAT repeat 318..363 CDD:381749
Blue background indicates that the domain is not in the aligned region.

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