DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and SPOM_SPAC222.18

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001343068.1 Gene:SPOM_SPAC222.18 / 9407033 PomBaseID:SPAC222.18 Length:111 Species:Schizosaccharomyces pombe


Alignment Length:86 Identity:22/86 - (25%)
Similarity:37/86 - (43%) Gaps:21/86 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDL---KNRRGPPFAFVEFEDARDADDA---------- 60
            :|:.|...|:|.:.:...|.|:|::...|:   .|.:...:||||||:...|:.|          
pombe    20 LYIRNFGTDMRARTLGQAFEKWGRIVRCDIPISSNPQAHRYAFVEFEEREKAELAHEKMRNAKIG 84

  Fly    61 --------VKARDGYDYDGYR 73
                    .|:|:.|..|..|
pombe    85 NDIIFVEWAKSRERYHRDDKR 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 22/86 (26%)
RRM2_SRSF1_like 115..188 CDD:410013
SPOM_SPAC222.18NP_001343068.1 RRM_SF 19..94 CDD:473069 17/73 (23%)
Blue background indicates that the domain is not in the aligned region.

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