DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and PUB1

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:198 Identity:39/198 - (19%)
Similarity:79/198 - (39%) Gaps:21/198 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDL---KNRRGPPFAFVEFEDARDADDAVKARDGYDYD 70
            :|||||...|....::..|...|.:..:.:   ||.:...:||||:..:.||:.|::..:|...:
Yeast    77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE 141

  Fly    71 GYRLRVEFPRGGGPGSYRG------GNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQ 129
            ...:::.:.......|...      |:.|....|          ...|:.::...:.|.....|.
Yeast   142 NNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDD----------ETLRNAFKDFPSYLSGHVMWD 196

  Fly   130 DLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDND 194
            ......|..|.|.|. :..|....::.::.:|:.....:::.:..|.:.....| :.|.:.|:|:
Yeast   197 MQTGSSRGYGFVSFT-SQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNY-QQRRNYGNNN 259

  Fly   195 RGG 197
            |||
Yeast   260 RGG 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 18/73 (25%)
RRM2_SRSF1_like 115..188 CDD:410013 10/72 (14%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026 18/72 (25%)
RRM2_PUB1 161..240 CDD:410031 12/89 (13%)
RRM3_PUB1 341..414 CDD:410033
Blue background indicates that the domain is not in the aligned region.

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