DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and RIE1

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_011766.3 Gene:RIE1 / 853165 SGDID:S000003482 Length:781 Species:Saccharomyces cerevisiae


Alignment Length:123 Identity:30/123 - (24%)
Similarity:51/123 - (41%) Gaps:30/123 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDL------KNR------------------ 41
            |.::.|..:||.::|.....:|:.|.:..||::..|.:      ||:                  
Yeast   534 MSNQQESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGS 598

  Fly    42 -RGPPFAFVEFEDARDADDAVKARDGYDYDGYR-LRVEFPRGGGPGSYRGGNRNDRSR 97
             ||  :.||.||...||..|:...|||.....: |.|.|.:  ..|:....:.:|:|:
Yeast   599 SRG--YGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQ--KRGNLSSSDDDDQSQ 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 26/102 (25%)
RRM2_SRSF1_like 115..188 CDD:410013
RIE1NP_011766.3 PABP-1234 195..757 CDD:130689 30/123 (24%)
RRM3_CELF1-6 542..634 CDD:409797 23/93 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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