DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and PTI1

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_011672.1 Gene:PTI1 / 853060 SGDID:S000003388 Length:425 Species:Saccharomyces cerevisiae


Alignment Length:57 Identity:13/57 - (22%)
Similarity:24/57 - (42%) Gaps:10/57 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP--------FAFVEFEDARDA 57
            :.:.||||:.....|..:....|.|  :|:|.:..|.        |.::..:|.:.|
Yeast    22 LQITNLPPEWNQDIITSVVAGSGPV--IDIKAKNDPRTGKLTGVLFDYLTSKDCKRA 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 13/57 (23%)
RRM2_SRSF1_like 115..188 CDD:410013
PTI1NP_011672.1 RRM 21..90 CDD:214636 13/57 (23%)
CSTF2_hinge 185..255 CDD:433869
PABP-1234 <306..413 CDD:130689
Blue background indicates that the domain is not in the aligned region.

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