DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF2 and PTI1

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_011672.1 Gene:PTI1 / 853060 SGDID:S000003388 Length:425 Species:Saccharomyces cerevisiae


Alignment Length:57 Identity:13/57 - (22%)
Similarity:24/57 - (42%) Gaps:10/57 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP--------FAFVEFEDARDA 57
            :.:.||||:.....|..:....|.|  :|:|.:..|.        |.::..:|.:.|
Yeast    22 LQITNLPPEWNQDIITSVVAGSGPV--IDIKAKNDPRTGKLTGVLFDYLTSKDCKRA 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 13/57 (23%)
RRM2_SRSF1_like 115..188 CDD:410013
PTI1NP_011672.1 RRM 21..90 CDD:214636 13/57 (23%)
CSTF2_hinge 185..255 CDD:405077
PABP-1234 <306..413 CDD:130689
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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