DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and NOP6

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_010068.1 Gene:NOP6 / 851313 SGDID:S000002372 Length:225 Species:Saccharomyces cerevisiae


Alignment Length:207 Identity:39/207 - (18%)
Similarity:68/207 - (32%) Gaps:91/207 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGN----- 91
            |:|...||.::     |.:.::.:|.:..||            :.:.|.|..|.|..|.:     
Yeast     8 KLTKKQLKAQQ-----FRKSKEEKDQEKDVK------------KEQAPEGKRPNSAAGNDGEEPV 55

  Fly    92 ----RNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSG 152
                :..|.|.|.|:.|.:|     :::.|.|..||...:..:|::|.:.:..            
Yeast    56 KKKRKTRRGRGGKGKNGKKG-----NRFIVFVGSLPRDITAVELQNHFKNSSP------------ 103

  Fly   153 VVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGG-------------------- 197
                             |..|.|:.:| :|::   |...|.||.|                    
Yeast   104 -----------------DQIRLRADKG-IAFL---EFDADKDRTGIQRRMDIALLQHGTLLKEKK 147

  Fly   198 -------GGGGS 202
                   ||||:
Yeast   148 INVELTVGGGGN 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 8/47 (17%)
RRM2_SRSF1_like 115..188 CDD:410013 11/72 (15%)
NOP6NP_010068.1 NARP1 <1..55 CDD:403685 13/63 (21%)
RRM_Nop6 78..151 CDD:409834 16/105 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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