DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and CSTF64

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_177325.2 Gene:CSTF64 / 843510 AraportID:AT1G71800 Length:461 Species:Arabidopsis thaliana


Alignment Length:160 Identity:38/160 - (23%)
Similarity:61/160 - (38%) Gaps:38/160 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRR--GPP--FAFVEFEDARDADDAVKA 63
            |:..| ::|||:|.|...:.::::..:.|.|....|...|  |.|  :.|.|::|...|..|.:.
plant     6 SQRRC-VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69

  Fly    64 RDGYDYDGYRLRVEFPRG------------GGPGSYRGGNRNDRSRDGGGRM------------- 103
            ...|:.:|.:|||:|...            ||||........:..:..||.:             
plant    70 LQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGPVDSNMHQPVGLHLA 134

  Fly   104 --------GGRGPPAKRSQYRVMVTGLPAS 125
                    |..|.|...||:......:|||
plant   135 TTAASVIAGALGGPQVGSQFTQSNLQVPAS 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 24/80 (30%)
RRM2_SRSF1_like 115..188 CDD:410013 3/11 (27%)
CSTF64NP_177325.2 RRM_CSTF2_RNA15_like 9..85 CDD:409832 22/76 (29%)
SF-CC1 <11..212 CDD:273721 36/154 (23%)
CSTF_C 419..454 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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