DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and RBP47C

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_175180.1 Gene:RBP47C / 841157 AraportID:AT1G47490 Length:432 Species:Arabidopsis thaliana


Alignment Length:171 Identity:43/171 - (25%)
Similarity:70/171 - (40%) Gaps:18/171 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFH------KFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGY 67
            |:||:|.||:....:.:.|.      |..||. :|....|...:.||.|.|..:...|:...:|.
plant   199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVV-LDANTGRSKGYGFVRFGDENERTKAMTEMNGV 262

  Fly    68 DYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGG--RGPPAKRSQYRVMVTGLPASGSWQD 130
            ......:|:      ||.:.|  ..|...:.||....|  ..|........:.|.||.:|.:.:|
plant   263 KCSSRAMRI------GPATPR--KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDED 319

  Fly   131 LKDHMREAGDVCFAD-TYKDGSGVVEFLRHEDMKYAIKKLD 170
            ||....|.|::.... ....|.|.|:|:...:.:.|::||:
plant   320 LKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 19/76 (25%)
RRM2_SRSF1_like 115..188 CDD:410013 16/57 (28%)
RBP47CNP_175180.1 RRM1_SECp43_like 102..184 CDD:409780
RRM2_SECp43_like 196..275 CDD:409781 21/82 (26%)
RRM3_NGR1_NAM8_like 303..374 CDD:409782 16/58 (28%)
Blue background indicates that the domain is not in the aligned region.

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