DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and RBP45A

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_568815.1 Gene:RBP45A / 835581 AraportID:AT5G54900 Length:387 Species:Arabidopsis thaliana


Alignment Length:254 Identity:50/254 - (19%)
Similarity:90/254 - (35%) Gaps:62/254 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLF-HKFGKV----TFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
            |:||:|.|::....:.|.| :.:|.|    ..:|....|...:.||.|.|..:...|:...:|..
plant   156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQY 220

  Fly    69 YDGYRLRVEFPRGGGPGSYRGGNRND-------RSRDGGGRMGGRGPPAKRSQYRVMVTGLPASG 126
            .....:|:      ||.:    |:|.       .....|...|...|    :...:.|.||.|:.
plant   221 CSTRPMRI------GPAA----NKNALPMQPAMYQNTQGANAGDNDP----NNTTIFVGGLDANV 271

  Fly   127 SWQDLKDHMREAGDV----------CFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEV 181
            :..:||....:.|::          |         |.|::......::|:..|:.::.......:
plant   272 TDDELKSIFGQFGELLHVKIPPGKRC---------GFVQYANKASAEHALSVLNGTQLGGQSIRL 327

  Fly   182 AYIRVREDSGDNDRGGGGGGSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSP 240
            ::.|......|..:..|||..|......||.|            ::::|     ||..|
plant   328 SWGRSPNKQSDQAQWNGGGYYGYPPQPQGGYG------------YAAQP-----PTQDP 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 18/75 (24%)
RRM2_SRSF1_like 115..188 CDD:410013 13/82 (16%)
RBP45ANP_568815.1 RRM1_SECp43_like 61..138 CDD:409780
RRM2_SECp43_like 153..232 CDD:409781 20/81 (25%)
RRM3_NGR1_NAM8_like 259..330 CDD:409782 12/79 (15%)
Blue background indicates that the domain is not in the aligned region.

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