DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and U1-70K

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_190636.1 Gene:U1-70K / 824230 AraportID:AT3G50670 Length:427 Species:Arabidopsis thaliana


Alignment Length:262 Identity:70/262 - (26%)
Similarity:99/262 - (37%) Gaps:70/262 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFV----DLKNRRGPPFAFVEFEDARDADDAVKARDGYDY 69
            ::|..|..:.....|:..|..:|.:..|    |....:...:||:|:...||...|.|..||...
plant   140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKI 204

  Fly    70 DGYRLRVEFPRGGGPGSYR----GGNRNDRSRDGGGR--MGGRGPPAKRSQYRVMVTGLPASGSW 128
            ||.|:.|:..||....::|    ||... .||.|||.  :|.:.|..:.||     :..|:..  
plant   205 DGRRVLVDVERGRTVPNWRPRRLGGGLG-TSRVGGGEEIVGEQQPQGRTSQ-----SEEPSRP-- 261

  Fly   129 QDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHE--GEVAYIRVREDSG 191
            ::.::..||.|                           |:.:.||..|||  .|.:..|.|||..
plant   262 REEREKSREKG---------------------------KERERSRELSHEQPRERSRDRPREDKH 299

  Fly   192 DNDRGGGGGGSGGGGGGSGGGGSRD---YRDRSRSRSFSSRPRR---RGTPTYSPVRRQSYSRSR 250
            ..||             ..||..||   .|||.|:|....|.||   ||....|    :.:.|.|
plant   300 HRDR-------------DQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTS----RDHDRDR 347

  Fly   251 SR 252
            ||
plant   348 SR 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 20/74 (27%)
RRM2_SRSF1_like 115..188 CDD:410013 12/74 (16%)
U1-70KNP_190636.1 U1snRNP70_N 40..129 CDD:432406
RRM_snRNP70 137..227 CDD:409682 23/86 (27%)
PRK12678 245..>395 CDD:237171 39/156 (25%)
Blue background indicates that the domain is not in the aligned region.

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