DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and tia1

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:203 Identity:41/203 - (20%)
Similarity:72/203 - (35%) Gaps:59/203 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NECRIYVGNLPPDIRTKDIQDLFHKFGKVT----FVDLKNRRGPPFAFVEFEDARDADDAVKARD 65
            |...::||:|.|:|.|.||:..|..||:::    ..|:...:...:.||.|.:..||::|::...
Zfish    94 NHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 158

  Fly    66 GYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRV------------- 117
            |....|.::|..:                         ..|.|||.::.|..             
Zfish   159 GQWLGGRQIRTNW-------------------------ATRKPPAPKATYETNTKHLSFDEVVNQ 198

  Fly   118 ------------MVTGLPASGSWQDLKDHMREAGDVCFADTYKD-GSGVVEFLRHEDMKYAIKKL 169
                        :.|||    :.|.::......|.:.....:.| |...|.|..||...:||..:
Zfish   199 SSPSNCTVYCGGVTTGL----TEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIVSV 259

  Fly   170 DDSRFRSH 177
            :.:....|
Zfish   260 NGTSLEGH 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 22/78 (28%)
RRM2_SRSF1_like 115..188 CDD:410013 15/89 (17%)
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027
RRM2_TIA1 94..171 CDD:410030 22/76 (29%)
RRM3_TIA1 204..275 CDD:410032 14/68 (21%)
Blue background indicates that the domain is not in the aligned region.

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