back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SF2 and HNRNPM

DIOPT Version :9

Sequence 1:	NP_001247139.1	Gene:	SF2 / 53443	FlyBaseID:	FBgn0283477	Length:	255	Species:	Drosophila melanogaster
Sequence 2:	NP_005959.2	Gene:	HNRNPM / 4670	HGNCID:	5046	Length:	730	Species:	Homo sapiens

Alignment Length:	155	Identity:	50/155 - (32%)
Similarity:	68/155 - (43%)	Gaps:	34/155 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly    79 PRG-GGPGSYRGGNR---NDRSRD-----GGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDH 134
            |.| |.||....|.|   |::.::     ||.|......|.||  ||..:|.:|....||.|||.
Human    28 PSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNRFEPYANPTKR--YRAFITNIPFDVKWQSLKDL 90

  Fly   135 MRE-AGDVCFADTYKDGSG------VVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVRED-SG 191
            ::| .|:|.:.:...|..|      ||||...|.||.|.:.|:     .|......::|:|| .|
Human    91 VKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN-----KHSLSGRPLKVKEDPDG 150

  Fly   192 DNDR----------GGGGGGSGGGG 206
            ::.|          ||.|.|.||.|
Human   151 EHARRAMQKVMATTGGMGMGPGGPG 175

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.