DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and srsf1

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001006919.1 Gene:srsf1 / 448766 XenbaseID:XB-GENE-486875 Length:267 Species:Xenopus tropicalis


Alignment Length:266 Identity:161/266 - (60%)
Similarity:188/266 - (70%) Gaps:29/266 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRR-GPPFAFVEFEDARDADDAVKARDGYD 68
            |:|||||||||||||||||:|:|:|:|.:..:|||||| |||||||||||.|||:|||..|||||
 Frog    14 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYD 78

  Fly    69 YDGYRLRVEFPR--------------GGGPGSYRGGNRNDRSRDGGGRMGGR-GPPAKRSQYRVM 118
            ||||||||||||              |||.|...||........|||...|| |||::||:|||:
 Frog    79 YDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVV 143

  Fly   119 VTGLPASGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAY 183
            |:|||.||||||||||||||||||:||.::||:|||||:|.|||.||::|||:::|||||||.||
 Frog   144 VSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 208

  Fly   184 IRVREDSGDNDRGGGGGGSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRR-RGTPTYSPVRRQSYS 247
            |||:.|       |....|.|.........||. |.||.|||.|..||| ||:|.|||    .:|
 Frog   209 IRVKVD-------GPRSPSYGRSRSRSRSRSRS-RSRSNSRSRSYSPRRSRGSPRYSP----RHS 261

  Fly   248 RSRSRS 253
            |||||:
 Frog   262 RSRSRT 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 60/75 (80%)
RRM2_SRSF1_like 115..188 CDD:410013 55/72 (76%)
srsf1NP_001006919.1 RRM1_SRSF1 17..90 CDD:241041 58/72 (81%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..137 15/46 (33%)
RRM2_SRSF1_like 140..212 CDD:241045 54/71 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..267 27/66 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 117 1.000 Domainoid score I5864
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31411
Inparanoid 1 1.050 297 1.000 Inparanoid score I2678
OMA 1 1.010 - - QHG54399
OrthoDB 1 1.010 - - D1321443at2759
OrthoFinder 1 1.000 - - FOG0000217
OrthoInspector 1 1.000 - - oto102324
Panther 1 1.100 - - LDO PTHR23147
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1390
SonicParanoid 1 1.000 - - X1030
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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