DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and dazap1

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:XP_012815264.1 Gene:dazap1 / 448406 XenbaseID:XB-GENE-856469 Length:411 Species:Xenopus tropicalis


Alignment Length:143 Identity:42/143 - (29%)
Similarity:63/143 - (44%) Gaps:26/143 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GSRNE----CRIYVGNLPPDIRTKDIQDLFHKFGKVTFV----DLKNRRGPPFAFVEFEDARDAD 58
            |.|.|    .:|:||.:|.:....::::.|.:||.||.|    |.:.:|...|.|:.|||.:..|
 Frog   105 GPRTENSRSNKIFVGGIPHNCGETELREYFKRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169

  Fly    59 DAVKARDGYDYDGYRLRVE--FPRG------GGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQY 115
            .||... .:|..|.::.|:  .||.      |.|||.:.|.|..:|...|  ..|:.||..:..|
 Frog   170 QAVNMH-FHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGGRAMQSTANG--WTGQPPPTWQQSY 231

  Fly   116 RVMVTGLPASGSW 128
                   ...|.|
 Frog   232 -------SPQGMW 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 25/86 (29%)
RRM2_SRSF1_like 115..188 CDD:410013 3/14 (21%)
dazap1XP_012815264.1 RRM1_DAZAP1 11..92 CDD:409988
RRM2_DAZAP1 112..191 CDD:409765 23/79 (29%)
Blue background indicates that the domain is not in the aligned region.

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