DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and rump

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster


Alignment Length:231 Identity:74/231 - (32%)
Similarity:104/231 - (45%) Gaps:54/231 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 DADDAVKARD------GYDYDGYRLRVEFPRGGGPGSYRGG-NRNDRSRDGGGRMGGRGPPAKRS 113
            ||.::|::|:      |....|.|.......|.|.||..|| ...||||:             |.
  Fly     4 DASNSVESREKERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDRSRE-------------RR 55

  Fly   114 QYRVMVTGLPASGSWQDLKDHMRE-AGDVCFADTYKD------GSGVVEFLRHEDMKYAIKKLDD 171
            ..||.::.:|....||||||..|. .|.:.:...:.|      |.|:|||...|:::.|::|:  
  Fly    56 NCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKM-- 118

  Fly   172 SRFRSHEGEVAYIRVREDSGD---------NDRGGGGGGSG------GGGGGSGGGGSRDYRDRS 221
            :|:..:..|:.   |:||.|:         .|.||||||.|      ||..|.||||.||:.| .
  Fly   119 NRYEVNGRELV---VKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMD-D 179

  Fly   222 RSRSFSSR--PRRRGTPTYSPVRRQSYSRSRSRSNY 255
            |.|.||.|  .|..|...:: :....|:.|   |||
  Fly   180 RDRGFSRRDDDRLSGRNNFN-MMSNDYNNS---SNY 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 7/29 (24%)
RRM2_SRSF1_like 115..188 CDD:410013 23/79 (29%)
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 61/187 (33%)
RRM1_hnRNPM_like 58..133 CDD:409819 23/79 (29%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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