DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SF2 and srsf7a

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_991236.1 Gene:srsf7a / 402972 ZFINID:ZDB-GENE-040426-1798 Length:258 Species:Danio rerio


Alignment Length:257 Identity:83/257 - (32%)
Similarity:108/257 - (42%) Gaps:59/257 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-FAFVEFEDARDADDAVKARDGYD 68
            ::|::|||:|.......:::..|..:|.:..|.:  .|.|| |||||:||||||:||||..||..
Zfish    12 SDCKVYVGDLGNGAAKGELERAFSYYGPLRSVWV--ARNPPGFAFVEYEDARDAEDAVKGMDGKV 74

  Fly    69 YDGYRLRVEFPRG-------GGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASG 126
            ..|.|:|||...|       |.| |.|..:.|||.                  |:...||..|..
Zfish    75 LCGARVRVELSNGMSRKSRYGRP-SRRQFDPNDRC------------------YQCGETGHYAYD 120

  Fly   127 SWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSG 191
            .::..|...|           :..||.....|....:|.      ||.||:|.     |.|..| 
Zfish   121 CYRFSKRRSR-----------RSRSGSRSRSRSRGRRYR------SRSRSNER-----RYRSPS- 162

  Fly   192 DNDRGGGGGGSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSRSRS 253
            .:.|....|..|.....|.||.||....||:|....||.|       :|:.|.|.|||||||
Zfish   163 YSKRRSRSGSPGRSRSRSPGGRSRSPVRRSKSPVRRSRSR-------TPLHRDSRSRSRSRS 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 33/75 (44%)
RRM2_SRSF1_like 115..188 CDD:410013 16/72 (22%)
srsf7aNP_991236.1 RRM_SF 15..91 CDD:473069 33/77 (43%)
zf-CCHC 106..121 CDD:395050 6/32 (19%)

Return to query results.
Submit another query.