DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and lark

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:290 Identity:73/290 - (25%)
Similarity:101/290 - (34%) Gaps:82/290 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYDYDGY 72
            :|:||||....|..::::||.|:|.|...|:....|    ||..:...|..||:|..:|...||.
  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYG----FVHLDCVGDVQDAIKELNGRVVDGQ 147

  Fly    73 RLRVEF--------PRGGGPGS-YRGGNRNDRSRD----GGGRMGGRGPPAKRSQYRVMVTGLPA 124
            .|:|:.        |..|.|.. ||.|.....|::    .|...|||.||:..|           
  Fly   148 PLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLS----------- 201

  Fly   125 SGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLR------HEDMKYAIKKLDDSRFRSHEGEVAY 183
            :|.::|     |..|    .|.|........|||      ..|..|..::.:||| ..:|.....
  Fly   202 AGGYRD-----RMYG----RDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSR-DLYERRYQT 256

  Fly   184 IRVRE-------------------------------DSGDNDRGGGGGGSGGGGGGSGGGGSRDY 217
            .|:|:                               |:..:.|......|..|....|......|
  Fly   257 SRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPHGY 321

  Fly   218 RDRSR----SRSFSSRPRRRGTPTYSPVRR 243
            .|.||    .|..|||..|..:|   |.||
  Fly   322 EDFSRDAFDERMISSRGMRGPSP---PGRR 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 24/79 (30%)
RRM2_SRSF1_like 115..188 CDD:410013 16/78 (21%)
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 23/68 (34%)
hnRNP-R-Q <88..>258 CDD:273732 53/194 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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