DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and cstf2

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:XP_009289373.1 Gene:cstf2 / 386806 ZFINID:ZDB-GENE-031118-2 Length:508 Species:Danio rerio


Alignment Length:73 Identity:22/73 - (30%)
Similarity:40/73 - (54%) Gaps:4/73 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRR--GPP--FAFVEFEDARDADDAVKARDGYDY 69
            ::|||:|.:...:.::|:|.:.|.|....|...|  |.|  :.|.|::|...|..|::..:|.::
Zfish    26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 90

  Fly    70 DGYRLRVE 77
            .|..|||:
Zfish    91 SGRALRVD 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 22/73 (30%)
RRM2_SRSF1_like 115..188 CDD:410013
cstf2XP_009289373.1 RRM_CSTF2_CSTF2T 19..102 CDD:410072 22/73 (30%)
PABP-1234 <26..372 CDD:130689 22/73 (30%)
CSTF2_hinge 120..199 CDD:433869
CSTF_C 464..503 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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