DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and rbm14a

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_001108616.1 Gene:rbm14a / 323721 ZFINID:ZDB-GENE-050522-496 Length:471 Species:Danio rerio


Alignment Length:196 Identity:49/196 - (25%)
Similarity:75/196 - (38%) Gaps:38/196 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARD 65
            |...:..:::||||..:....|:..||..||:|..:.:..:    ||||..:....||.|::..:
Zfish     1 MDDSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVLRQ----FAFVHLQGEGAADSAIRDLN 61

  Fly    66 GYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQD 130
            |.:|.|..|.||                          ..:|.|...:  :|.|..|.||.|.:|
Zfish    62 GREYRGRSLVVE--------------------------ESKGRPLNST--KVFVGNLCASCSVED 98

  Fly   131 LKDHMREAGDVCFADTYK------DGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVRED 189
            |.|.....|.|...|..|      .|...|.....||.:.||:.|..:.|......|...:|::.
Zfish    99 LYDLFSPYGKVLDCDKVKTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQS 163

  Fly   190 S 190
            :
Zfish   164 T 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 23/76 (30%)
RRM2_SRSF1_like 115..188 CDD:410013 23/78 (29%)
rbm14aNP_001108616.1 RRM_SF 7..75 CDD:473069 23/97 (24%)
RRM_SF 84..156 CDD:473069 21/71 (30%)

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