DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and srsf4

DIOPT Version :9

Sequence 1:NP_001247139.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:353 Identity:117/353 - (33%)
Similarity:145/353 - (41%) Gaps:118/353 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYDYDGY 72
            |:|||.|....|.||::..|..:||:..|||||..|    ||||:|.|||||||...:|.|..|.
Zfish     3 RVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYG----FVEFDDPRDADDAVYDLNGKDLCGK 63

  Fly    73 RLRVEFPRGGGPGSYRGGNRNDRS----RDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKD 133
            |:.||...|   ....||||:.||    |.|||..|.|..|..|:.||::|..|.:..|||||||
Zfish    64 RVIVEHTIG---QRRDGGNRSGRSNRYGRGGGGGGGDRYGPPTRTDYRLIVENLSSRCSWQDLKD 125

  Fly   134 HMREAGDVCFADTYK--DGSGVVEFLRHEDMKYAIKKLDD------------------------- 171
            :||:||:|.:|||.|  ...||:||.::.|||.|::|||.                         
Zfish   126 YMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGARRRRSYSR 190

  Fly   172 ----SRFRSHEGEVAYIRVREDSGDNDRGGGGG----------------------GSGGGGGGSG 210
                ||.||....    |.|..|..:.|.|..|                      .:|...||..
Zfish   191 SASRSRSRSRRSR----RSRSHSRTSSRSGASGSRSRSRSTSKKAKSRSSRMEESSNGARKGGDS 251

  Fly   211 G-------------------GGSRDYRDRSRSRSFSSRP-------------------------- 230
            |                   .|..|.|.||||:|.:.|.                          
Zfish   252 GRDNSLSRSPQNKKSKRENKRGRSDSRSRSRSKSRNDRDLSRESGSKSQEASKSGDEGRAGTHRS 316

  Fly   231 -----RRRGTPTYSPVRRQSYSRSRSRS 253
                 .|..||..:..||:|.|||||||
Zfish   317 RAHSRSRSQTPPNADQRRESRSRSRSRS 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_001247139.1 RRM_SF 3..80 CDD:418427 35/71 (49%)
RRM2_SRSF1_like 115..188 CDD:410013 36/103 (35%)
srsf4NP_955868.1 RRM1_SRSF4_like 3..72 CDD:240783 35/72 (49%)
RRM2_SRSF4_like 107..178 CDD:241044 31/70 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000217
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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