DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and RBMX

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_002130.2 Gene:RBMX / 27316 HGNCID:9910 Length:391 Species:Homo sapiens


Alignment Length:382 Identity:91/382 - (23%)
Similarity:119/382 - (31%) Gaps:163/382 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFV----DLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
            ::::|.|..:...|.::.:|.|:|::..|    |.:..:...||||.||...||.||.:..:|..
Human     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKS 73

  Fly    69 YDGYRLRVEF----------------------PRG--GGPGSYRGGNRNDRSR-----DGG---- 100
            .||..::||.                      |||  ||.|. .||.|...||     |||    
Human    74 LDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG-SGGTRGPPSRGGHMDDGGYSMN 137

  Fly   101 -------------------------------------GRMGGRGP-----------------PAK 111
                                                 ..||||.|                 |::
Human   138 FNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSR 202

  Fly   112 RSQY------------RVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKY 164
            |..|            .......|:|   :|.:|:.....|.    ||:|       ..|...: 
Human   203 RDVYLSPRDDGYSTKDSYSSRDYPSS---RDTRDYAPPPRDY----TYRD-------YGHSSSR- 252

  Fly   165 AIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGG-----------------GGGSGGGGGGS--- 209
                 ||...|.:.....|.|.| |..|:..||.                 .|.....||.|   
Human   253 -----DDYPSRGYSDRDGYGRDR-DYSDHPSGGSYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD 311

  Fly   210 -------GGGGSRDYRDRSRSRSFSS-RPR----RRGTPT-----YSPVRRQSYSRS 249
                   |.|||||....|||..:|| |.|    .||.|.     |.| .|.|||.|
Human   312 DYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPP-PRDSYSSS 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 23/97 (24%)
RRM2_SRSF1_like 115..188 CDD:410013 15/84 (18%)
RBMXNP_002130.2 RRM_RBMX_like 7..86 CDD:409816 23/76 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..391 77/330 (23%)
dnaA 165..>306 CDD:455861 28/161 (17%)
RBM1CTR 173..217 CDD:400429 8/43 (19%)
Necessary for the association to nascent RNAPII transcripts and nuclear localization 186..236 7/52 (13%)
Necessary for RNA-binding 333..391 14/36 (39%)

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