DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and usp101

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_593779.1 Gene:usp101 / 2542461 PomBaseID:SPAC19A8.13 Length:261 Species:Schizosaccharomyces pombe


Alignment Length:241 Identity:59/241 - (24%)
Similarity:83/241 - (34%) Gaps:100/241 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVD-LKNR---RGPPFAFVEFEDARDADDAVKARDGYDY 69
            :::..|..|.:..||:..|.::|.:..:. ::|:   :...:|||.||..||...|.||..|...
pombe   102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLML 166

  Fly    70 DGYRLRVEFPRGGGPGSYRGGNRNDRSRDG------GGRMGGRGPPAKRSQYRVMVTGLPASGSW 128
            :|.|:.|:..||             |:..|      ||.:|||....:|.:              
pombe   167 NGRRIVVDVERG-------------RTVKGWLPRKLGGGLGGRHYTKERPR-------------- 204

  Fly   129 QDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDN 193
                   ||.|                                ||||               ||:
pombe   205 -------RERG--------------------------------SRFR---------------GDS 215

  Fly   194 DRGGGGGGSGGGGGGSGGGGSRDYRDRSRSRSFS------SRPRRR 233
               |..||..||...|.|||||..|..:||...|      |.|:||
pombe   216 ---GFRGGYRGGFRKSSGGGSRFGRGPTRSSHSSDYGGRDSSPKRR 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 21/74 (28%)
RRM2_SRSF1_like 115..188 CDD:410013 7/72 (10%)
usp101NP_593779.1 U1snRNP70_N 3..91 CDD:432406
RRM_snRNP70 99..188 CDD:409682 25/98 (26%)
Blue background indicates that the domain is not in the aligned region.

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