DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and Tia1

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_035715.1 Gene:Tia1 / 21841 MGIID:107914 Length:386 Species:Mus musculus


Alignment Length:204 Identity:44/204 - (21%)
Similarity:76/204 - (37%) Gaps:57/204 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SRNECRIYVGNLPPDIRTKDIQDLFHKFGKVT----FVDLKNRRGPPFAFVEFEDARDADDAVKA 63
            |::...::||:|.|:|.|:||:..|..||:::    ..|:...:...:.||.|.:..||::|::.
Mouse   102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166

  Fly    64 RDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYR------------ 116
            ..|....|.::|..:                         ..|.|||.:|.|.            
Mouse   167 MGGQWLGGRQIRTNW-------------------------ATRKPPAPKSTYESNTKQLSYDEVV 206

  Fly   117 --------VMVTGLPASGSWQDLKDHMREA----GDVCFADTYKD-GSGVVEFLRHEDMKYAIKK 168
                    .:..|...||..:.|   ||:.    |.:.....:.| |...|.|..||...:||..
Mouse   207 SQSSPNNCTVYCGGVTSGLTEQL---MRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVS 268

  Fly   169 LDDSRFRSH 177
            ::.:....|
Mouse   269 VNGTTIEGH 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 22/80 (28%)
RRM2_SRSF1_like 115..188 CDD:410013 17/88 (19%)
Tia1NP_035715.1 RRM1_TIA1 8..81 CDD:410027
RRM2_TIA1 104..181 CDD:410030 21/76 (28%)
RRM3_TIAR 214..286 CDD:241064 16/67 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 355..376
Blue background indicates that the domain is not in the aligned region.

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