Protein Alignment SF2 and sqd-1

DIOPT Version :10

• Sequence 1: NP_652611.1
• Gene: SF2 / 53443
• FlyBaseID: FBgn0283477
• Length: 255
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 219
• Identity: 57/219 - (26%)
• Similarity: 86/219 - (39%)
• Gaps: 45/219 - (20%)

  Fly     8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLK----NRRGPPFAFVEFEDARDADDAVKARDGYD 68
            :|:||.:.|::..:|:...|.::|:|....:|    |.|...||||||........|:.||: ..
 Worm    30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE-QT 93

  Fly    69 YDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAK-RSQYRVMVTGLPASGSWQDLK 132
            ..|..:.|:                               ||| |...:|.|.|||:..|.|||:
 Worm    94 IKGKSVEVK-------------------------------PAKSRENKKVFVGGLPSDYSEQDLR 127

  Fly   133 DHMREAGDVCFA----DTYKDGSGVVEFLRHEDMKYAIKKLDDSR--FRSHEGEV--AYIRVRED 189
            .|..:.|.|...    |..........|:..|:.:.|.|....::  |.:.|.:|  |..:.:..
 Worm   128 SHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRF 192

  Fly   190 SGDNDRGGGGGGSGGGGGGSGGGG 213
            .|...|..||.|..||.||:...|
 Worm   193 PGAQGRMPGGRGMYGGRGGNNNSG 216

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SF2	NP_652611.1	RRM_SF	3..80	CDD:473069	22/75 (29%)
		RRM2_SRSF1_like	115..188	CDD:410013	21/80 (26%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	22/105 (21%)
		RRM_SF	111..185	CDD:473069	20/73 (27%)