DRSC/TRiP Functional Genomics Resources

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Protein Alignment SF2 and cpf-2

DIOPT Version :10

Sequence 1:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster
Sequence 2:NP_499734.1 Gene:cpf-2 / 176742 WormBaseID:WBGene00000774 Length:336 Species:Caenorhabditis elegans


Alignment Length:194 Identity:44/194 - (22%)
Similarity:75/194 - (38%) Gaps:49/194 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRR--GPP--FAFVEFEDARDADDAVKAR 64
            |::..::|||:..|:....|:.:|.|.|.|..:.:.:.|  |.|  :.|:||.|.:.|:.|::..
 Worm    15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79

  Fly    65 DGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQ 129
            :||:..|..|||:...||            .:.:..|.......|.:.:.|              
 Worm    80 NGYELSGRILRVDSAAGG------------MNMEEFGSSSNAPAPVEENPY-------------- 118

  Fly   130 DLKDHMREAGDVCFADTYKDG-SGVVEFLRHEDMKYAIKKLDDS---------RFRSHEGEVAY 183
                     |..|.|....:. |..|..|..|.|...:|:|.:|         :|.....::||
 Worm   119 ---------GPECDAGKAPERISQTVASLAPEKMFELMKQLQESLKNNPSELHKFLVEHPQIAY 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 25/79 (32%)
RRM2_SRSF1_like 115..188 CDD:410013 15/79 (19%)
cpf-2NP_499734.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 24/75 (32%)
CSTF2_hinge 115..194 CDD:433869 15/82 (18%)
CSTF_C 299..334 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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