DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RecQ4 and recQ

DIOPT Version :10

Sequence 1:NP_652607.1 Gene:RecQ4 / 53438 FlyBaseID:FBgn0040290 Length:1579 Species:Drosophila melanogaster
Sequence 2:YP_026263.3 Gene:recQ / 948318 ECOCYCID:EG10833 Length:609 Species:Escherichia coli


Alignment Length:486 Identity:167/486 - (34%)
Similarity:244/486 - (50%) Gaps:104/486 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   851 SVQDTTPEVLEALHMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGA 915
            :::....:||:  ..||:..||.||:..|...|||...||.:.||.|||||||:||.|    :..
E. coli     8 NLESGAKQVLQ--ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL----LNG 66

  Fly   916 ITLVISPLVSLMEDQV-----TGVPHFLRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVV 975
            :|:|:|||:|||:|||     .||    .|.||::.||..|::::......|:|.:|.::||.::
E. coli    67 LTVVVSPLISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127

  Fly   976 AGERATGFGAILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATATL 1040
                ...|...|....|:..| :|||||:|||.|:|||.|..:.: ||:.......:.|||||..
E. coli   128 ----LDNFLEHLAHWNPVLLA-VDEAHCISQWGHDFRPEYAALGQ-LRQRFPTLPFMALTATADD 186

  Fly  1041 PTRVSIINHLGISDGERGIISDIPLPDNLVLSVSKDENRDAALLQLLNSERFEPCQSI------- 1098
            .||..|:..||::|         ||     :.:|   :.|...::.:..|:|:|...:       
E. coli   187 TTRQDIVRLLGLND---------PL-----IQIS---SFDRPNIRYMLMEKFKPLDQLMRYVQEQ 234

  Fly  1099 -----IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKA 1158
                 ||||..|.:.|..|..:::                |.::  |..||||:..:.|..||:.
E. coli   235 RGKSGIIYCNSRAKVEDTAARLQS----------------KGIS--AAAYHAGLENNVRADVQEK 281

  Fly  1159 FMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSHCHLFLDAKGGD 1223
            |..::|:|||||:|||||||||::|.|:|:::|||.|||.||.|||||||||:...||.|.  .|
E. coli   282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP--AD 344

  Fly  1224 QSELRRHVYS------NSIDRHVI-------------RKLLQKIF-----VPC-SCD------KE 1257
            .:.|||.:..      ..|:||.:             |.:|...|     .|| :||      |:
E. coli   345 MAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQ 409

  Fly  1258 ASKRTALPIPLEGDGPRVHMCPGHEIGFSVE 1288
            ....|...|.|...| ||:...|  :|:.||
E. coli   410 YDGSTDAQIALSTIG-RVNQRFG--MGYVVE 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ4NP_652607.1 RecQL4_SLD2_NTD 9..55 CDD:412085
RecQ 855..>1216 CDD:440280 139/377 (37%)
recQYP_026263.3 PRK11057 1..607 CDD:182933 167/486 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.