DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RecQ4 and RECQSIM

DIOPT Version :9

Sequence 1:NP_652607.1 Gene:RecQ4 / 53438 FlyBaseID:FBgn0040290 Length:1579 Species:Drosophila melanogaster
Sequence 2:NP_001330792.1 Gene:RECQSIM / 832830 AraportID:AT5G27680 Length:858 Species:Arabidopsis thaliana


Alignment Length:1008 Identity:226/1008 - (22%)
Similarity:359/1008 - (35%) Gaps:374/1008 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   667 MGG--CDGGVLTCF----QCGGVGHFAQQCKVKGDSLLPLSAQLEEDPSPFPTLAEAQEMASQGA 725
            :||  ||..|....    :.||....:..|....:.:|...|.    ||.|    .:.|...|.:
plant    29 VGGKSCDDAVEYILKGNHRTGGFKPASLLCSSGSNKILGKRAM----PSSF----SSSESKRQSS 85

  Fly   726 VVAHSRNISRLPQAANAAILQGDELNESEEDDQESSGDEEVQQHPDPNWSSDEMDVDFEALDAAV 790
            ::.|.|::::..:       :||.....|.|.|.    |.|.:|      |:|           |
plant    86 LLDHFRSVNQNKK-------KGDTFGTVEVDSQL----ETVSEH------SEE-----------V 122

  Fly   791 EASLSQPVSQEKAASPIKTYVGHKIPEEFLKQAGLDTTASSSNRSQHGGVKPLYDLLPDGSVQDT 855
            ..||: ||..|.:.          .||..|.....:.::|...|                     
plant   123 RKSLA-PVFMESSC----------FPEGQLLNGCSEASSSWEKR--------------------- 155

  Fly   856 TPEVLEALHMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVI 920
            ...:|.  :.||.::.|..|..|:...::....||..:||||||||:|:||.|    .|.:.:||
plant   156 VNSILR--NRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALL----TGKVVVVI 214

  Fly   921 SPLVSLMEDQVTGVPHFLRAHCLHTNQTAPQRMKIQQ-MIANGEID-------------ILLVSP 971
            |||:|||.||           ||..:     |.|:.. .:.:|::|             |:.|.|
plant   215 SPLISLMHDQ-----------CLKLS-----RHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCP 263

  Fly   972 EAVVAGERATGFGAILRQLPP---------IAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLG 1027
            |.||            |.:.|         ||...||||||||:|.|:|||.|..: .|||:|..
plant   264 ETVV------------RLIKPLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKL-SVLRENFC 315

  Fly  1028 VRT---------VLGLTATATLPTRVSIINHLGISDGERGIISDIPLPD---------------- 1067
            ...         ::.||||||:..:..|:..|.:|...:.:::....|:                
plant   316 ASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSY 380

  Fly  1068 -----NLVLSVSKDENRDAALLQLLNSER-----FEPCQSIIIYCTRRDE--------------- 1107
                 |||...|:.:|.....|.:::.|.     |....|..|:.|..||               
plant   381 AKDFQNLVDLYSEKKNSTGKKLAVISRESEEQTDFGSHDSENIHETDYDEDEEDQENSLAKKNSS 445

  Fly  1108 -----------------------------------CE------------RIAGFIRTCVQDRREP 1125
                                               ||            .:.|.....|..|:| 
plant   446 NGKELSEAYLEDETDIFQSVDDWDVACGEFCAMPSCELLEIPVPSEKQKDLEGLTIIYVPTRKE- 509

  Fly  1126 TQDQTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNM 1190
            :.:..|....|..:|..|:|.:|....|.|.:.|..|:|::|||||||||||:|.::|.:|||..
plant   510 SVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGW 574

  Fly  1191 PRNFESYVQEIGRAGRDGLPSHCHLFLD----------AKGGDQSELRRHVYSNSIDRHVIR--K 1243
            .::.|:|.||.|||||||..:.|.|:.|          .:..:|:|....:.|:.. |:.:.  :
plant   575 LQSLEAYYQEAGRAGRDGELAECVLYADLSRAPTLLPSRRSKEQTEQAYKMLSDCF-RYGMNTSQ 638

  Fly  1244 LLQKIFVPCSCDKEASKRTALPIPLEGDGPRVHMCPGHEIGFSVEKTVEMLDIPAENISTLL--- 1305
            ...||.|....::.:||:                |...::  ..|...|::|:..|  :.||   
plant   639 CRAKILVEYFGEEFSSKK----------------CNSCDV--CTEGPPELVDVREE--ANLLFQV 683

  Fly  1306 ---CYMELDPRWCISVLSSAYVMAKVISYGGPKYLKHAAKECPPLAMAIALQIRDKTFKEDSNII 1367
               .::::|.       .|.:...:....|..|..|.:.|  |.|...|: ::|::..|      
plant   684 ITAFHLQVDN-------DSEHAPYEDYGLGNSKQNKLSHK--PNLLFFIS-KLREQCEK------ 732

  Fly  1368 EFSVTDIAAGIGWNSGVVKYQLKDLEWVKVNGYPKRSPITVSFYDLGFRIKVPGDFTESEIDNAL 1432
             |..||..    |..|:.:.       ::..||.|                        |:||  
plant   733 -FKETDCL----WWKGLARI-------MEAEGYIK------------------------EMDN-- 759

  Fly  1433 DTLYTRSVKQERTQLIQLQYVAHGLAAVAYSSCGQCCNADFPQDRG-EQLKAIVRNYFANDYPQD 1496
                    |..|.::..:|                      |.::| :||          |:..|
plant   760 --------KDRRVEIKFIQ----------------------PTEKGKKQL----------DFQDD 784

  Fly  1497 LELEIEPSNVPDENIIDDVHALINMYPDNTFTG 1529
            ..|.:.|          :...|:::..|.|::|
plant   785 KPLYVYP----------EADMLLSLKQDRTYSG 807

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ4NP_652607.1 RecQL4_SLD2_NTD 9..55 CDD:421279
RecQ 864..>1218 CDD:223588 133/473 (28%)
RECQSIMNP_001330792.1 UBA_like_SF 8..42 CDD:304366 5/12 (42%)
DEXDc 162..355 CDD:214692 73/225 (32%)
DEAD 170..341 CDD:278688 68/203 (33%)
HELICc 486..600 CDD:238034 43/114 (38%)
RecQ_Zn_bind 612..663 CDD:292742 10/69 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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