DRSC/TRiP Functional Genomics Resources

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Protein Alignment RecQ4 and RecQl3

DIOPT Version :9

Sequence 1:NP_652607.1 Gene:RecQ4 / 53438 FlyBaseID:FBgn0040290 Length:1579 Species:Drosophila melanogaster
Sequence 2:NP_195299.2 Gene:RecQl3 / 829727 AraportID:AT4G35740 Length:713 Species:Arabidopsis thaliana


Alignment Length:413 Identity:144/413 - (34%)
Similarity:205/413 - (49%) Gaps:67/413 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   847 LPDGSVQDTTPEVL--EAL------HMFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQ 903
            ||..:||.:...|.  |||      | |||.:||..|..||...:||......:.||.|||:|||
plant     6 LPVQNVQSSDKNVAGKEALVKLLRWH-FGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQ 69

  Fly   904 LPAYLYSRKVGAITLVISPLVSLMEDQVTGVPH-FLRAHCLHTNQTAPQRMKIQQMIANGE--ID 965
            :||.   .|.| |.||:|||::|||:||..:.. .:.|..|.:.|....:.||.:.:.:|:  :.
plant    70 IPAL---AKPG-IVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVR 130

  Fly   966 ILLVSPEAVVAGERATGFGAILRQLPP---IAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLG 1027
            :|.|:||.:.    ..||...||:|..   :....||||||:|.|.|:|||||..: ..||.:|.
plant   131 LLYVTPELIA----TKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQL-STLRDSLA 190

  Fly  1028 VRTVLGLTATATLPTRVSIINHLGI--------SDGERGIISDIPLPDNLVLSVSKDENRDAALL 1084
            ...||.|||||....:..:|:.|.:        |.....|..::...|.|       :|....|.
plant   191 DVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKDLL-------DNAYTDLG 248

  Fly  1085 QLLNSERFEPCQSI--IIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPYHAGM 1147
            .||.|     |.:|  ||||..|..|:                  |.:.....:...:..||||:
plant   249 NLLKS-----CGNICAIIYCLERTTCD------------------DLSVHLSSIGISSAAYHAGL 290

  Fly  1148 PASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDGLPSH 1212
            .:..|.||...::|::.:|:|||:||||||:|.|:|.|.|:|:|::.||:.||.||||||.|||.
plant   291 NSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSR 355

  Fly  1213 CHLFLDAKGGDQSELRRHVYSNS 1235
            ..|:.   |.|..:...::..||
plant   356 SVLYY---GVDDRKKMEYLLRNS 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ4NP_652607.1 RecQL4_SLD2_NTD 9..55 CDD:421279
RecQ 864..>1218 CDD:223588 132/369 (36%)
RecQl3NP_195299.2 DEXDc 32..235 CDD:214692 76/211 (36%)
DEAD 41..207 CDD:278688 67/174 (39%)
HELICc 229..359 CDD:238034 55/159 (35%)
RecQ_Zn_bind 364..427 CDD:292742 2/12 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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