DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RecQ4 and RECQI1

DIOPT Version :9

Sequence 1:NP_652607.1 Gene:RecQ4 / 53438 FlyBaseID:FBgn0040290 Length:1579 Species:Drosophila melanogaster
Sequence 2:NP_187225.2 Gene:RECQI1 / 819743 AraportID:AT3G05740 Length:606 Species:Arabidopsis thaliana


Alignment Length:671 Identity:197/671 - (29%)
Similarity:291/671 - (43%) Gaps:179/671 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   665 MDMGGCDG-GVLTCFQCGGVGHFAQQCKVKGDSLLPLSAQLEEDPSPFPTLAEAQEMASQGAVVA 728
            :|:.|.|| ..:|...|             ||..|...|..||....:..: :|.|..:||    
plant    35 VDLYGDDGRDFITVELC-------------GDDFLAALADFEEGTEEWDDI-QAIESEAQG---- 81

  Fly   729 HSRNISRLPQAANAAILQGDELNESEEDDQESSGDEEV-QQHPDP---------NWSSDEMDVD- 782
                  .|.:..:.:....|...::::||.:|..:..| :..|:|         :.|||..||: 
plant    82 ------NLAEMFDKSTNPSDNGFDTDDDDDDSRVEVHVIEDSPEPKKKPEIVELDSSSDLEDVET 140

  Fly   783 -FEALDAAVEASLSQPVSQEKAASPIKTYVGHKIPEEFLKQAGLDTTASSSNRSQHGGVKPLYDL 846
             |:....:...|.|...|.|.:.|.|               :|...:...||:...   .|.|:.
plant   141 RFKVPRRSQTCSRSMDYSMEDSVSTI---------------SGRKPSVQISNKDHE---TPSYEE 187

  Fly   847 LPDGSVQDTTPEVLEALH-----MFGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPA 906
            |          :.|:.|.     :||:..||..|.:|...::......|.:.||.||||||||||
plant   188 L----------QALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPA 242

  Fly   907 YLYSRKVGAITLVISPLVSLMEDQVT------GVPHFLRAHCLHTNQTAPQRMKIQQMIA--NGE 963
            .|   |.| :|:|||||:||::||:.      |:|    |..|::.||:.|...:.|.:.  |..
plant   243 TL---KAG-VTIVISPLLSLIQDQIVALNLKFGIP----ATFLNSQQTSSQAAAVLQELRRDNPS 299

  Fly   964 IDILLVSPEAVVAGERATGFGAILRQLPP---IAFACIDEAHCVSQWSHNFRPSYLMI-CKVLRK 1024
            ..:|.|:||. :||  ::.|...||.|..   :|...:|||||||||.|:|||.|..: |  |::
plant   300 CKLLYVTPEK-IAG--SSSFLETLRCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGC--LKQ 359

  Fly  1025 NLGVRTVLGLTATATLPTRVSIINHLGISDGERGIISDIPLPDNLVLSVSKDE-----------N 1078
            |.....|:.||||||    .|:.         :.::..:.:|...||.:|.|.           .
plant   360 NFPRVPVMALTATAT----ESVC---------QDVLKSLRIPRAPVLKMSFDRINLKYEVIVKTK 411

  Fly  1079 RDAALLQLLNSERFEPCQSIIIYCTRRDECERIAGFIRTCVQDRREPTQDQTKKRKRVNWQAEPY 1143
            .....||.|..:||:. ||.|:||..:.||..:|.|:            ::..|.|.|.     |
plant   412 EPLKQLQELLRDRFKD-QSGIVYCLSKSECVDVAKFL------------NEKCKVKTVY-----Y 458

  Fly  1144 HAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVIHYNMPRNFESYVQEIGRAGRDG 1208
            |||:||.:|..||:.:.:.|:|||.|||||||||:|.|:|.|||..:.:..|||.||.|||||||
plant   459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQESGRAGRDG 523

  Fly  1209 LPSHCHLFLDAK----------GGD-----------------------QSELRRHV----YSNSI 1236
            |.:.|......|          .|.                       ::|.||.:    :..|.
plant   524 LQAQCICLYQKKDFSRVVCMLRNGQGRNMDRFKSAMAQAKKMQQYCELKTECRRQMLLEYFGESF 588

  Fly  1237 DRHVIRKLLQKIFVPC-SCDK 1256
            ||.:.:..|.    || :|::
plant   589 DRMICKSSLN----PCDNCER 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ4NP_652607.1 RecQL4_SLD2_NTD 9..55 CDD:421279
RecQ 864..>1218 CDD:223588 141/381 (37%)
RECQI1NP_187225.2 recQ_fam 202..603 CDD:129701 152/448 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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