DRSC/TRiP Functional Genomics Resources

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Protein Alignment c12.2 and REA1

DIOPT Version :9

Sequence 1:NP_001259381.1 Gene:c12.2 / 53434 FlyBaseID:FBgn0040234 Length:1403 Species:Drosophila melanogaster
Sequence 2:NP_013207.1 Gene:REA1 / 850796 SGDID:S000004096 Length:4910 Species:Saccharomyces cerevisiae


Alignment Length:1729 Identity:331/1729 - (19%)
Similarity:573/1729 - (33%) Gaps:598/1729 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 WASTTA-GKDQPEEDSLTIGDVSVRLRKPKDPQLVPQQYADTSRIKETTDLKRRNELKYAS--DG 88
            ||...| |.:|.......:  ::.|.|.|::...|.:......::|...|      ..|||  |.
Yeast  1277 WALRDAVGYEQLAASGYML--LAERCRTPQEKVTVKKTLEKVMKVKLDMD------QYYASLEDK 1333

  Fly    89 TLQLSQSALHHLRW--------MLQKDAL--RQDMFLLGQPGPLRR---QLAMQFL--EL----- 133
            :|:    |:..:.|        :|....|  ::.:.|:|:.|..:.   ||..||:  ||     
Yeast  1334 SLE----AIGSVTWTKGMRRLSVLVSSCLKNKEPVLLVGETGCGKTTICQLLAQFMGRELITLNA 1394

  Fly   134 -----------TQR------EVEY-----------VALSRDTTESDLKQRREINDRAAI------ 164
                       .||      |::|           :|..:|....:|.|....:|...|      
Yeast  1395 HQNTETGDILGAQRPVRNRSEIQYKLIKSLKTALNIANDQDVDLKELLQLYSKSDNKNIAEDVQL 1459

  Fly   165 --------------FHDQGAVRAALNGRVLVLDGVEHAERNVLPILNNLLENREMHLESGKFLMS 215
                          :.|...::|...|...:||.:..|:.:||..||::||              
Yeast  1460 EIQKLRDSLNVLFEWSDGPLIQAMRTGNFFLLDEISLADDSVLERLNSVLE-------------- 1510

  Fly   216 PERYDKLLEKHSREQLDEWGLLRVSEQFRVVALGLPTHKYKGTPLDPPLRSRFQSRNVTTYSYGE 280
            |||...|.|:.|.:     .|:..||.|:..|...|...|....|.|.||:||....|.:.   |
Yeast  1511 PERSLLLAEQGSSD-----SLVTASENFQFFATMNPGGDYGKKELSPALRNRFTEIWVPSM---E 1567

  Fly   281 LYEELQQEAPSVPGEQLKQLLTFALTLQQADPVLQLPDFPIHNLALGVKMLAANPS---LSLHDV 342
            .:.::.....|...|.||.|         |:|:::..::      .|.|:...|.:   :||.|:
Yeast  1568 DFNDVNMIVSSRLLEDLKDL---------ANPIVKFSEW------FGKKLGGGNATSGVISLRDI 1617

  Fly   343 ------ISRIYP-----------------------YQTMLKPDQKKRVEELLKKLDIQLVPSPSI 378
                  |::::|                       ..|....:.:..::.|..:..|||:.... 
Yeast  1618 LAWVEFINKVFPKIQNKSTALIQGASMVFIDALGTNNTAYLAENENDLKSLRTECIIQLLKLCG- 1681

  Fly   379 KKIEAQSQENSLIHIKLDELQLNL------PEGQIPTASTYFVDLPHQRQALASLLQAYAV-GDV 436
            ..:|.|..|.:.|.:..||||:.:      |:.|   :|::.:..|.....|..:::|..| ..:
Yeast  1682 DDLELQQIETNEIIVTQDELQVGMFKIPRFPDAQ---SSSFNLTAPTTASNLVRVVRAMQVHKPI 1743

  Fly   437 CLVGEKGVGKLTLTQEL----------LRLLQQTSEPMMLYEDMTSRDIVQQRITSPQGDTVWRD 491
            .|.|..||||.:|...|          :.|.:||.     ..|:...|...:|    .|:.:|.|
Yeast  1744 LLEGSPGVGKTSLITALANITGNKLTRINLSEQTD-----LVDLFGADAPGER----SGEFLWHD 1799

  Fly   492 SPLVRAAKSGSVAVLNGLHRLHKSTASVLQRLIHDRELQLCDGTTLLGANRYQALLQQGFSKEEL 556
            :|.:||.|.|...:|:.::...:|....|...:..|            ...|...|...||    
Yeast  1800 APFLRAMKKGEWVLLDEMNLASQSVLEGLNACLDHR------------GEAYIPELDISFS---- 1848

  Fly   557 GKLGFLPIHESFRVVALAEPPRLGGGQP---------------SWLTPE---LLSLFLYQELRPL 603
                   .|.:|.|.|...|...|||:.               ..||.:   |::..||..:.| 
Yeast  1849 -------CHPNFLVFAAQNPQYQGGGRKGLPKSFVNRFSVVFIDMLTSDDLLLIAKHLYPSIEP- 1905

  Fly   604 RQSEEAELLAQLCGGDLPAGMDQLLKLAQLLRSSQDPL----LQGLAGT---LSTRQLLKLARRL 661
                                 |.:.|:.:|:.:.:|.:    |.|.:|:   .:.|..|:..:.|
Yeast  1906 ---------------------DIIAKMIKLMSTLEDQVCKRKLWGNSGSPWEFNLRDTLRWLKLL 1949

  Fly   662 AAYPESELSDVHEMLQNTFLARFMPALSRGALEQAIQQV-GIKPREIKLKSKKN----------- 714
            ..|...|..||.:.:......||.....:...:..|:.: |      |..:|:|           
Yeast  1950 NQYSICEDVDVFDFVDIIVKQRFRTISDKNKAQLLIEDIFG------KFSTKENFFKLTEDYVQI 2008

  Fly   715 ------------------------QIAVEDNSLRIGSTRWPL---GNPTQAQLSKV--------P 744
                                    .:||.::.|:..:..|||   |.....:...:        |
Yeast  2009 NNEVALRNPHYRYPITQNLFPLECNVAVYESVLKAINNNWPLVLVGPSNSGKTETIRFLASILGP 2073

  Fly   745 HTLFYEMPQHVQLLERLLQDY----------LIGEHLLLVGNQGVGKN--------------KLV 785
            ....:.|...:..:: :|..|          .|.|.|..:..:.:..|              .|:
Yeast  2074 RVDVFSMNSDIDSMD-ILGGYEQVDLTRQISYITEELTNIVREIISMNMKLSPNATAIMEGLNLL 2137

  Fly   786 DRLLELMQRPREY-------------IQLHRDTTVHSLTL----QATLKDGQVSYE--DSALVQA 831
            ..||..:..|.::             ::.|......|:.:    :...|:..|.:|  |..||:|
Yeast  2138 KYLLNNIVTPEKFQDFRNRFNRFFSHLEGHPLLKTMSMNIEKMTEIITKEASVKFEWFDGMLVKA 2202

  Fly   832 VRTGHVLVVDEADKAPVNVTCILRTLVE-SGEMVLADGRRIVPPGEGGRVPNSIETHPDFRLIV- 894
            |..||.|::|.|:....:|...|.:|:| .|.:::.:..:     |.|: |..::.||:|||.: 
Yeast  2203 VEKGHWLILDNANLCSPSVLDRLNSLLEIDGSLLINECSQ-----EDGQ-PRVLKPHPNFRLFLT 2261

  Fly   895 -----------LANRP--------------------GFPFLGNDFFAALGDVFSCHAISNPDPES 928
                       :.||.                    ||....|..|.::.|......::.||.. 
Yeast  2262 MDPKYGELSRAMRNRGVEIYIDELHSRSTAFDRLTLGFELGENIDFVSIDDGIKKIKLNEPDMS- 2325

  Fly   929 EIFLLQQYGPKVPIKTLRTLVNA-FGELRTLADEGMLNYPYSTREVVSIVKHLERYPEENMSEV- 991
              ..|:.|   ||....|..:.| ..::..|:||..:.     ..:.:::      |..::.|| 
Yeast  2326 --IPLKHY---VPSYLSRPCIFAQVHDILLLSDEEPIE-----ESLAAVI------PISHLGEVG 2374

  Fly   992 --VGNVLDFDRYQPEALQQVTQVLAKHGIESYAEEEIQAIRKQRILQASVNRHSGLGVSGPKFGK 1054
              ..|||:...|..:.:.:...|......:....|:|..:.|...|               ||.|
Yeast  2375 KWANNVLNCTEYSEKKIAERLYVFITFLTDMGVLEKINNLYKPANL---------------KFQK 2424

  Fly  1055 LDPKNEPHVGGNTWAGGSGGRDTAGLGGKGGPFRLDKGHKVHQLSDE------------------ 1101
                                  ..||..|             ||::|                  
Yeast  2425 ----------------------ALGLHDK-------------QLTEETVSLTLNEYVLPTVSKYS 2454

  Fly  1102 EKADVPEEI------------KRAAREMNRKAFEDKLKE---IKMSAHDHKLYAQFSEPNRKQVQ 1151
            :|...||.:            ..|.:.:|.|:...|:.|   |::||      |.|:..:.|.:.
Yeast  2455 DKIKSPESLYLLSSLRLLLNSLNALKLINEKSTHGKIDELTYIELSA------AAFNGRHLKNIP 2513

  Fly  1152 Q----------LKAVLEAMQTKSKERQWQKYQTHGDL--------------DDTRLVEGITGEKN 1192
            :          |..:.|.::|:|......:||.:.||              |:.||        .
Yeast  2514 RIPIFCILYNILTVMSENLKTESLFCGSNQYQYYWDLLVIVIAALETAVTKDEARL--------R 2570

  Fly  1193 IYRRRAEANPWADHVQEKPNRLKLVVDVSGSMYRFNGYDGRLDRQLEAVVMVMEAFEGFEKKIVY 1257
            :|:...::  |...|:.|.       |:..:.:        |:..|| ...|::...|....:::
Yeast  2571 VYKELIDS--WIASVKSKS-------DIEITPF--------LNINLE-FTDVLQLSRGHSITLLW 2617

  Fly  1258 DIIGH----SGEGWEIPFVTAGSPPKNDKERFEAIRMMHAHSQFCWSGDSTVKAAREACSTLGAE 1318
            ||...    :...|     .|.....|..|:|:.:|::    ||..|.:| :|...:....|.  
Yeast  2618 DIFRKNYPTTSNSW-----LAFEKLINLSEKFDKVRLL----QFSESYNS-IKDLMDVFRLLN-- 2670

  Fly  1319 QDYDNAIVVVLSDANL----QRYGIAPKDLAMALKRGEPKVKGYAIFIGSLAEEAD--------- 1370
               |:.:...||:.||    ...||  .:|.:...:...|.|.|      .|:|.|         
Yeast  2671 ---DDVLNNKLSEFNLLLSKLEDGI--NELELISNKFLNKRKHY------FADEFDNLIRYTFSV 2724

  Fly  1371 ---EINAEMPAGQSFVCMDLTKL-------PHILQQIFT 1399
               |:..|:....|.....||||       |.|...::|
Yeast  2725 DTAELIKELAPASSLATQKLTKLITNKYNYPPIFDVLWT 2763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
c12.2NP_001259381.1 AAA_5 112..268 CDD:285029 48/213 (23%)
AAA_5 435..595 CDD:285029 41/187 (22%)
AAA_5 770..916 CDD:285029 41/211 (19%)
vWA_F11C1-5a_type 1212..1403 CDD:238732 44/215 (20%)
REA1NP_013207.1 MDN1 89..4910 CDD:227596 331/1729 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5271
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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