DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vhl and Vhl

DIOPT Version :10

Sequence 1:NP_524986.1 Gene:Vhl / 53433 FlyBaseID:FBgn0041174 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_434688.1 Gene:Vhl / 24874 RGDID:3960 Length:185 Species:Rattus norvegicus


Alignment Length:138 Identity:35/138 - (25%)
Similarity:58/138 - (42%) Gaps:30/138 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NNRDGQQLVGADQGKVEVYVLFANTTYRTLDLYWVCERERENMYLTLKPFEEVRVNTFTTHSWLF 72
            |:|:..|            |:|.|.:.|.:...|:........|.||.|....|::::..|.|||
  Rat    33 NSREPSQ------------VIFCNRSPRVVLPLWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLF 85

  Fly    73 RDYYTGERMHVRSQRIFQPIRVRVPKSQQSPDQLVDVRSEVL---IHFPMRSLRENCLWLVARWL 134
            ||..|.:.:.|....:|.|              .::|..:.:   |..|:.:|:|.||.:| |.|
  Rat    86 RDAGTHDGLLVNQTELFVP--------------SLNVDGQPIFANITLPVYTLKERCLQVV-RSL 135

  Fly   135 IRTSNAPR 142
            ::..|..|
  Rat   136 VKPENYRR 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VhlNP_524986.1 pVHL 21..162 CDD:176472 32/125 (26%)
VhlNP_434688.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
VHL 29..110 CDD:460360 21/76 (28%)
VHL_C 122..170 CDD:407332 12/49 (24%)
Interaction with Elongin BC complex. /evidence=ECO:0000250 123..132 0/8 (0%)
Blue background indicates that the domain is not in the aligned region.

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