DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and SPT8

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_013156.1 Gene:SPT8 / 850744 SGDID:S000004045 Length:602 Species:Saccharomyces cerevisiae


Alignment Length:478 Identity:84/478 - (17%)
Similarity:149/478 - (31%) Gaps:202/478 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VGQPGATTSSNSSASN----------KSSLSVKPNYTLKFTLAGHTKA-VSAVKFSPNGEWLASS 90
            ||...|::|::.:::|          .::..:..:|.:..|.|...:. |:|:..|...::|...
Yeast   129 VGSREASSSTHEASANGEVYEYYKHMLNAAQIADSYNIYPTAAIPIQTHVNALAVSRGLKYLFLG 193

  Fly    91 SADKLIK---IWGAYDGKFEKTI-SGHKL-------GISDVAW---------------------- 122
            .:|..|:   :....:||...|| ..|.|       ||....|                      
Yeast   194 GSDGYIRKYDLLNTLEGKLSLTILQKHSLAESIQNAGILQSYWENEIPQKKSEMKLSANKTDYEP 258

  Fly   123 ----------SSDSRLLVSGSDD-----KTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIV 172
                      .|:...::||..:     :.::..|.|.....|...||:..|.....|.|.:..:
Yeast   259 KVSPVHSLEVQSECLFILSGLQNGGITMQGVRYMEGSIAHYFKGRNGHTQIVNILRLNGQEDRFL 323

  Fly   173 SGSFDESVRIWDVRTG-------------KCLKTLPAHS-------------------------- 198
            |||:|:.:..||::||             ..|:..|.:|                          
Yeast   324 SGSWDKRLLEWDLQTGDIVNEFKKSRSELSSLEMRPLYSSVDVSGNVNSGKENENADDDMDSLFG 388

  Fly   199 ------------DPV-----------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--- 231
                        :||                 .:::...|.|:.::|..:|...|||....|   
Yeast   389 DEDEDEKQDAGNEPVETGDGSNGEENKEQISEESLNIVYDESVFMTSGLNGSVHIWDRRMTQSPA 453

  Fly   232 ------------CLKTL--IDDD-------------------------------NPPVSFVKFSP 251
                        ||...  :|.|                               :.|||.||..|
Yeast   454 LSLERGAGVPPWCLSACWGVDGDHVYAGRRNACVEQFDLKMPSKPIHNLKLPSISGPVSCVKAMP 518

  Fly   252 NGKYILAATLDNTLKLWDY--------SKGKCLKT----YTGHKNEKYCIFAN----------FS 294
            |.|::|.|:.|| ::|::.        |..|..|.    ..||...   |.:|          .|
Yeast   519 NNKHLLCASRDN-IRLYNVEIAVDASNSTTKSSKVPFLIVPGHHGG---IISNLYLDPTSRFIIS 579

  Fly   295 VTGGK-WIVSGSEDNMVYIWNLQ 316
            .:|.: |..:.::..::|..:|:
Yeast   580 TSGNRGWQGNSTDTTLIYDIDLE 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 78/441 (18%)
WD40 repeat 75..112 CDD:293791 10/40 (25%)
WD40 repeat 118..154 CDD:293791 7/72 (10%)
WD40 repeat 159..195 CDD:293791 12/48 (25%)
WD40 repeat 202..237 CDD:293791 10/51 (20%)
WD40 repeat 244..280 CDD:293791 15/47 (32%)
WD40 repeat 288..325 CDD:293791 7/40 (18%)
WD40 repeat 331..357 CDD:293791
SPT8NP_013156.1 WD40 178..>355 CDD:421866 34/176 (19%)
WD40 repeat 180..218 CDD:293791 9/37 (24%)
WD40 repeat 264..302 CDD:293791 5/37 (14%)
WD40 304..593 CDD:421866 53/292 (18%)
WD40 repeat 310..346 CDD:293791 11/35 (31%)
WD40 repeat 353..408 CDD:293791 5/54 (9%)
WD40 repeat 362..457 CDD:293791 11/94 (12%)
WD40 repeat 464..503 CDD:293791 4/38 (11%)
WD40 repeat 511..558 CDD:293791 15/47 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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