DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and TUP1

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_010007.1 Gene:TUP1 / 850445 SGDID:S000000680 Length:713 Species:Saccharomyces cerevisiae


Alignment Length:490 Identity:110/490 - (22%)
Similarity:192/490 - (39%) Gaps:152/490 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSAS------------------------- 51
            |.|..|......|.|...|:.:.|..|  .|||::.::|:                         
Yeast   226 PSVKAPESTLKETEPENNNTSKINDTG--SATTATTTTATETEIKPKEEDATPASLHQDHYLVPY 288

  Fly    52 NKSSLSVKP----------------------NYTLKFTLA-------------GHTKAVSAVKFS 81
            |:.:...||                      :|.:.:..|             .||..|..||||
Yeast   289 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 353

  Fly    82 PNGEWLASSSADKLIKIWGAYDGKF------EKTISGHK-------------------------- 114
            .:||:|| :..:|..:::...||..      :...:.|:                          
Yeast   354 NDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANNHRNSITENNTTTSTDNNTMTTTTTTTIT 417

  Fly   115 --------------------------LGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLK 153
                                      |.|..|.:|.|.:.|.:|::|:.:::|::...|.:..|:
Yeast   418 TTAMTSAAELAKDVENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 482

  Fly   154 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 218
            ||...::..::.|..:.:||||.|.:|||||:|||:|..||.......:......||..|.:.|.
Yeast   483 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 547

  Fly   219 DGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTLKLWDY------ 270
            |...|:||:.:|..::.| |.:|       ..|..|.|:.:|:.:::.:||.::|||:.      
Yeast   548 DRAVRVWDSETGFLVERL-DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 611

  Fly   271 ------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTD 329
                  :.|.|..||.|||:   .:.:..:....::|:|||:|..|..|:.:|...:..||||.:
Yeast   612 SDSKTPNSGTCEVTYIGHKD---FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 673

  Fly   330 TVLCTA------CHPTENIIASAALENDKTIKLWK 358
            :|:..|      ..|..|:.|:.:  .|...::||
Yeast   674 SVISVAVANGSPLGPEYNVFATGS--GDCKARIWK 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 92/389 (24%)
WD40 repeat 75..112 CDD:293791 12/42 (29%)
WD40 repeat 118..154 CDD:293791 9/35 (26%)
WD40 repeat 159..195 CDD:293791 16/35 (46%)
WD40 repeat 202..237 CDD:293791 9/34 (26%)
WD40 repeat 244..280 CDD:293791 12/47 (26%)
WD40 repeat 288..325 CDD:293791 8/36 (22%)
WD40 repeat 331..357 CDD:293791 6/31 (19%)
TUP1NP_010007.1 Tup_N 11..88 CDD:400755
WD40 343..706 CDD:238121 91/369 (25%)
WD40 repeat 347..383 CDD:293791 12/36 (33%)
WD40 repeat 394..438 CDD:293791 0/43 (0%)
WD40 repeat 447..483 CDD:293791 9/35 (26%)
WD40 repeat 488..523 CDD:293791 15/34 (44%)
WD40 repeat 530..566 CDD:293791 10/36 (28%)
WD40 repeat 579..627 CDD:293791 12/47 (26%)
WD40 repeat 633..669 CDD:293791 8/35 (23%)
WD40 repeat 675..705 CDD:293791 6/31 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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